Later on Monday, West Bromwich Albion and Watford were also charged for failing to control their players in Saturday's league game at the Hawthorns, which the hosts won 3-1
Manchester City and Chelsea have been charged with failing to control their players during Saturday's Premier League match, the FA said on Monday.
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City striker Sergio Aguero's reckless tackle on Chelsea defender David Luiz in stoppage time sparked a melee at the Etihad Stadium, with players and coaching staff from both teams involved in ugly scenes.
City's Aguero and Fernandinho were sent off and will serve four and three-game bans respectively.
"Both Manchester City and Chelsea have been charged for failing to ensure their players conducted themselves in an orderly fashion and/or refrained from provocative behaviour," the FA said in a statement.
Leaders Chelsea won the match 3-1 to move four points clear of fourth-placed City.
Later on Monday, West Bromwich Albion and Watford were also charged for failing to control their players in Saturday's league game at the Hawthorns, which the hosts won 3-1.
In the 84th minute, Watford's Roberto Pereyra was sent off after reacting angrily to James McClean's challenge, resulting in a touchline clash involving both sets of players.
All the clubs charged by the FA have until 1800 GMT on December 8 to respond.