During the 50-minute meeting, Amidror and Chidambaram are believed to have deliberated on various aspects of the case and other issues concerning the two countries, sources said.
Both Amidror and Chidambaram refused to say anything on what transpired at the meeting.
Amidror's visit comes close on the heels of the arrest of a journalist in New Delhi in connection with the February 13 attack in which Tal Yehoshua Koren was seriously injured.
The scribe, Syed Mohammed Kazmi, used to write for an Iranian news agency and frequently travelled to the Middle East.
However, it is not clear how much information the home minister shared with Amidror on the terror attack probe as the investigation is still on.