The four-wicket victory over the West Indies in the cricket World Cup in Perth on Friday was Dhoni's 59th, while Ganguly had 58 under his belt.
The current India captain played a key role with an unbeaten 45-run knock against the West Indies, helping the side to a hard-fought victory at the WACA.
Under his leadership, India won the 2007 World T20 and 2011 World Cup at home, besides the Champions Trophy in England two years ago.
He was also at the helm when India achieved the number one Test rankings.
Image: Mahendra Singh Dhoni reacts after winning the game against the West Indies on Friday
Photograph: Vipin Pawar/Solaris Images