While about 2,000 beneficiaries were transferred an amount of Rs 35 lakh (Rs 3.5 million) on the Aadhaar platform, the figure is expected to go up on Thursday.
The programme is aimed at covering 200,000 beneficiaries.
"The implementation was glitch-free. The system has worked," said a government official, adding the number of transactions was expected to go up in the coming days.
On Tuesday being the first day, many government departments could not transfer the money before the closing hours (3 pm) for bank transactions.
"Some departments have sent advice (to transfer the money) after 3 pm. So that will come tomorrow," the official added.
The amount was transferred through the National Payments Corporation of India to eight banks for seven schemes, mostly education scholarships, in 20 districts, later transferred to the accounts of beneficiaries in 23 banks.
Earlier, the government had planned to roll out the scheme in 51 districts from January 1. The number of districts was first reduced to 43 and later to 20, owing to lack of preparedness in many of these districts.
The transfers were made in these districts even to the beneficiaries who did not have Aadhaar-linked
Mutual funds try to 'switch' off direct plans
The Afghan endgame: India's biggest challenge
Shakir edges Maradona to become Iraq's national coach
Here's to the folks of Goa, Daman and Diu!
Bihar govt sacks 110 MNREGS officials for corruption